DNA Software

Visual OMP
	Overview
	Tour
	Advantages
	Features
		Custom Experimental Setup
		Integrated Folding
		Automated Primer & Probe Design
		Cross-Hybridization
		Temperature Sensitivity
		Complete Thermodynamic Analysis
		BLAST & ClustalW Sequence Alignment
		Developer Edition
	Case Studies
	FAQs
	System Requirements
	Support
	Demos and Purchases
	Downloads & Updates

DNA Software > Products > Visual OMP > Features > BLAST & ClustalW Sequence Alignment



Integrated BLAST and ClustalW are a powerful addtion to Visual OMP. Perform BLAST searches of appropriate genomic databases (public or local) to find potential mis-hybridization gene sequences. Add mis-hybridized targets to your experiment to simulate your design in the presence of contaminating sequences. Use Clustal to align multiple gene sequences or pathogen strains to determine target sequences for amplification, SNP position, and primer binding sites.